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Environmental microbiology : methods and protocols / edited by Ian T. Paulsen, Andrew J. Holmes.

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Bibliographic Details
Other Authors: Paulsen, Ian T. (Editor), Holmes, Andrew (Andrew J.) (Editor)
Format: Book
Language:English
Published: New York : Humana Press, [2014]
Edition:Second edition.
Series:Methods in molecular biology (Clifton, N.J.) ; v. 1096.
Springer protocols (Series)
Subjects:
Microbial ecology.
Environmental Microbiology > Laboratory Manuals.
Methode.
Mikrobiologie.
Table of Contents:
  • Methods for isolation and cultivation of filamentous fungi / Helena Nevalainen, Liisa Kautto, and Junior Te'o
  • Rapid extraction of PCR-competent DNA from recalcitrant environmental samples / Michael R. Gillings
  • Quantitative PCR for detection of mRNA and gDNA in environmental isolates / Anthony J. Brzoska and Karl A. Hassan
  • Analysis of community dynamics in environmental samples using denaturing gradient gel electrophoresis / Claire L. Thompson
  • Terminal restriction fragment length polymorphism (T-RFLP) profiling of bacterial 16S rRNA genes / Catherine A. Osborne
  • Profiling the diversity of microbial communities with single-strand conformation polymorphism (SSCP) / Achim Schmalenberger and Christoph C. Tebbe
  • Human fecal source identification with real-time quantitative PCR / Orin C. Shanks ... [and 4 others]
  • Next generation barcode tagged sequencing for monitoring microbial community dynamics / Katy Breakwell, Sasha G. Tetu, and Liam D.H. Elbourne
  • Analysis of methanotroph community structure using a pmoA-based microarray / Guy C.J. Abell ... [and 3 others]
  • Biolog Phenotype MicroArrays for phenotypic characterization of microbial cells / Amanda M. Mackie ... [and 3 others]
  • Visualization of metabolic properties of bacterial cells using nanoscale secondary ion mass spectrometry (NanoSIMS) / Yi Vee Chew, Andrew J. Holmes, and John B. Cliff
  • Single-cell Raman sorting / Mengqiu Li ... [and 3 others]
  • Bacterial whole-cell biosensors for the detection of contaminants in water and soils / Yun Wang ... [and 3 others]
  • Stable isotope probing to study functional components of complex microbial ecosystems / Sophie Mazard and Hendrik Schäfer
  • Metagenomics using next-generation sequencing / Lauren Bragg and Gene W. Tyson
  • Targeted genomics of flow cytometrically sorted cultured and uncultured microbial groups / Sophie Mazard ... [and 4 others]
  • Quantitative microbial metatranscriptomics / Scott Gifford, Brandon Satinsky, and Mary Ann Moran
  • Quantitative metaproteomics : functional insights into microbial communities / Chongle Pan and Jillian F. Banfield.

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