Fungal genomics : methods and protocols / edited by Ronald P. de Vries, Adrian Tsang, Igor V. Grigoriev.
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| Online Access: |
Full Text (via Springer) |
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| Other Authors: | , , |
| Format: | Electronic eBook |
| Language: | English |
| Published: |
New York :
Humana Press : Springer,
[2018]
|
| Edition: | Second edition |
| Series: | Methods in molecular biology (Clifton, N.J.) ;
v. 1775. |
| Subjects: |
Table of Contents:
- Introduction : overview of fungal genomics / Ronald P. de Vries, Igor V. Grigoriev, and Adrian Tsang
- Fungal genomic DNA extraction methods for rapid genotyping and genome sequencing / Annie Bellemare, Tricia John, and Sandrine Marqueteau
- Purification of fungal high molecular weight genomic DNA from environmental samples / Laure Fauchery, Stéphane Uroz, Marc Buée, and Annegret Kohler
- Genome sequencing / Yuko Yoshinaga, Christopher Daum, Guifen He, and Ronan O'Malley
- Methods for genomic characterization and maintenance anaerobic fungi / Xuefeng Peng, Candice L. Swift, Michael K. Theodorou, and Michelle A. O'Malley
- Efficient extraction method for high quality fungal RNA from complex lignocellulosic substrates / Miia R. Mäkelä and Kristiina Hildén
- Isolation of high quality RNA for metatranscriptomic analysis of lignocellulose digestion in the rumen / R.J. Gruninger, R.J. Forster, and T.A. McAllister
- Fungal transcriptomics / Vasanth R. Singan, Rita C. Kuo, and Cindy Chen
- Mass spectrometry-based proteomics / Marcos Rafael Di Falco
- Mass spectrometry-based metabolomics / Young-Mo Kim and Heino M. Heyman
- Genome editing : CRISPR-Cas9 / Jakob B. Hoof, Christina S. Nødvig, and Uffe H. Mortensen
- Evolutionary adaptation togenerate mutants / Ronald P. de Vries, Ronnie Lubbers, Aleksandrina Patyshakuliyeva, Ad Wiebenga, and Isabelle Benoit-Gelber
- Genome assembly / Alicia Clum
- Fungal epigenomics : detection and analysis / Stephen J. Mondo, Rita C. Kuo, and Vasanth R. Singan
- Fungal genome annotation / Sajeet Haridas, Asaf Salamov, and Igor V. Grigoriev
- Manual gene curation and functional annotation / Erin McDonnell, Kimchi Strasser, and Adrian Tsang
- Evaluating programs for predicting genes and transcripts with RNA-Seq support in fungal genomes / Ian Reid
- Genomic sequence variation analysis by resequencing / Joel Martin, Wendy Schackwitz, and Anna Lipzen
- ChIP-Seq analysis in Neurospora crassa / Aileen R. Ferraro and Zachary A. Lewis
- Fungal phylogenomics / Robert Riley and Laszlo Nagy
- Phylogenetic analysis of protein family / Letian Song, Sherry Wu, and Adrian Tsang
- Parasexual crossings for bulk segregant analysis in Aspergillus niger to facilitate mutant identification via whole genome sequencing / Mark Arentshorst and Arthur F.J. Ram.