Research in computational molecular biology [electronic resource] : 10th annual international conference, RECOMB 2006, Venice, Italy, April 2-5, 2006 : proceedings / Alberto Apostolico [and others] (eds.)
"This volume contains the papers presented at the 10th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2006), which was held in Venice, Italy, on April 2-5, 2006."
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Full Text (via Springer) |
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| Other title: | RECOMB 2006. |
| Format: | Electronic Conference Proceeding eBook |
| Language: | English |
| Published: |
Berlin ; New York :
Springer,
©2006.
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| Series: | Lecture notes in computer science ;
3909. Lecture notes in computer science. Lecture notes in bioinformatics. |
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Table of Contents:
- Integrated protein interaction networks for 11 microbes / Balaji S. Srinivasan [and others]
- Hypergraph model of multi-residue interactions in proteins : sequentially-constrained partitioning algorithms for optimization of site-directed protein recombination / Xiaoduan Ye, Alan M. Friedman and Chris Bailey-Kellogg
- Biological networks: comparison, conservation, and evolutionary trees / Benny Chor and Tamir Tuller
- Assessing significance of connectivity and conservation in protein interaction networks / Mehmet Koyuturk, Ananth Grama and Wojciech Szpankowski
- Clustering short gene expression profiles / Ling Wang, Marco Ramoni and Paola Sebastiani
- A patient-gene model for temporal expression profiles in clinical studies / Naftali Kaminski and Ziv Bar-Joseph
- Global interaction networks probed by mass spectrometry / Anne-Claude Gavin
- Statistical evaluation of genome rearrangement / David Sankoff
- An improved statistic for detecting over-represented gene ontology annotations in gene sets / Steffen Grossmann [and others]
- Protein function annotation based on ortholog clusters extracted from incomplete genomes using combinatorial optimization / Akshay Vashist, Casimir Kulikowski and Ilya Muchnik
- Detecting microRNA targets by linking sequence, microRNA and gene expression data / Jim C. Huang, Quaid D. Morris and Brendan J. Frey
- RNA secondary structure prediction via energy density minimization / Can Alkan [and others]
- Structural alignment of pseudoknotted RNA / Banu Dost [and others]
- Stan Ulam and computational biology / Michael S. Waterman
- CONTRAlign: discriminative training for protein sequence alignment / Chuong B. Do, Samuel S. Gross and Serafim Batzoglou
- Clustering near-identical sequences for fast homology search / Michael Cameron, Yaniv Bernstein and Hugh E. Williams
- New methods for detecting lineage-specific selection / Adam Siepel, Katherine S. Pollard and David Haussler
- A probabilistic model for gene content evolution with duplication, loss, and horizontal transfer / Miklos Csuros and Istvan Miklos
- A sublinear-time randomized approximation scheme for the Robinson-Foulds metric / Nicholas D. Pattengale and Bernard M.E. Moret
- Algorithms to distinguish the role of gene-conversion from single-crossover recombination in the derivation of SNP sequences in populations / Yun S. Song [and others]
- A new approach to protein identification / Nuno Bandeira [and others]
- Markov methods for hierarchical coarse-graining of large protein dynamics / Chakra Chennubhotla and Ivet Bahar
- Simulating protein motions with rigidity analysis / Shawna Thomas [and others]
- Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation / Tsung-Han Chiang [and others]
- An outsider's view of the genome / Carl Zimmer
- Alignment statistics for long-range correlated genomic sequences / Philipp W. Messer [and others]
- Simple and fast inverse alignment / John Kececioglu and Eagu Kim
- Revealing the proteome complexity by mass spectrometry / Roman A. Zubarev
- Motif Yggdrasil : sampling from a tree mixture model / Samuel A. Andersson and Jens Lagergren
- A study of accessible motifs and RNA folding complexity / Ydo Wexler, Chaya Zilberstein and Michal Ziv-Ukelson
- A parameterized algorithm for protein structure alignment / Jinbo Xu, Feng Jiao and Bonnie Berger
- Geometric sieving: automated distributed optimization of 3D motifs for protein function prediction / Brian Y. Chen [and others]
- A branch-and-reduce algorithm for the contact map overlap problem / Wei Xie and Nikolaos V. Sahinidis
- A novel minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles / Ivelin Georgiev, Ryan H. Lilien and Bruce R. Donald
- 10 years of the International Conference on Research in Computational Molecular Biology / Sarah J. Aerni and Eleazar Eskin
- Sorting by weighted reversals, transpositions, and inverted transpositions / Martin Bader and Enno Ohlebusch
- A parsimony approach to genome-wide ortholog assignment / Zheng Fu [and others]
- Detecting the dependent evolution of biosequences / Jeremy Darot, Chen-Hsiang Yeang and David Haussler.