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Marine genomics : methods and protocols / edited by Sarah J. Bourlat, Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden.

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Bibliographic Details
Other Authors: Bourlat, Sarah J. (Editor)
Format: Book
Language:English
Published: New York : Humana Press/Springer Science+Business Media LLC, [2016]
Series:Methods in molecular biology (Clifton, N.J.) ; v. 1452.
Springer protocols (Series)
Subjects:
Marine biology > Research > Methodology.
Marine organisms > Genome mapping > Laboratory manuals.
Marine organisms > Genetics > Research > Laboratory manuals.
Genomics > Laboratory manuals.
Bioinformatics.
Table of Contents:
  • 1. Sampling of riverine or marine bacterial communities in remote locations : from field to publication / Katja Lehmann
  • 2. DNA extraction protocols for whole-genome sequencing in marine organisms / Marina Panova, Henrik Aronsson, R. Andrew Cameron, Peter Dahl, Anna Godhe, Ulrika Lind, Olga Ortega-Martinez, Ricardo Pereyra, Sylvie V.M. Tesson, Anna-Lisa Wrange, Anders Blomberg, and Kerstin Johannesson
  • 3. High-throughput sequencing of complete mitochondrial genomes / Andrew George Briscoe, Kevin Peter Hopkins, and Andrea Waeschenbach
  • 4. Phylogenomics using transcriptome data / Johanna Taylor Cannon and Kevin Michael Kocot
  • 5. SNP discovery using next generation transcriptomic sequencing / Pierre De Wit
  • 6. SNP arrays for species identification in salmonids / Roman Wenne, Agata Drywa, Matthew Kent, Kristil Kindem Sundsaasen, and Sigbjørn Lien
  • 7. The next-generation PCR-based quantification method for ambient waters : digital PCR / Yiping Cao, John F. Griffith, and Stephen B. Weisberg
  • 8. Using environmental DNA for invasive species surveillance and monitoring / Andrew R. Mahon and Christopher L. Jerde
  • 9. Microarrays/DNA chips for the detection of waterborne pathogens / Filipa F. Vale
  • 10. DNA barcoding of marine metazoans / Dirk Steinke, Sean W.J. Prosser, and Paul D.N. Hebert
  • 11. DNA barcoding marine biodiversity : steps from mere cataloguing to giving reasons for biological differences / Mikko Nikinmaa and Miriam Götting
  • 12. Metabarcoding marine sediments : preparation of amplicon libraries / Vera G. Fonseca and Delphine Lallias
  • 13. Preparation of amplicon libraries for metabarcoding of marine eukaryotes using Illumina MiSeq : the dual-PCR method / Sarah J. Bourlat, Quiterie Haenel, Jennie Finnman, and Matthieu Leray
  • 14. Preparation of amplicon libraries for metabarcoding of marine eukaryotes using Illumina MiSeq : the adapter ligation method / Matthieu Leray, Quiterie Haenel, and Sarah J. Bourlat
  • 15. Visualizing patterns of marine eukaryotic diversity from metabarcoding data using QIIME / Matthieu Leray and Nancy Knowlton
  • 16. Analysis of Illumina MiSeq metabarcoding data : application to benthic indices for environmental monitoring / Eva Aylagas and Naiara Rodríguez-Ezpeleta.

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